| Registro completo |
| Provedor de dados: |
ArchiMer
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| País: |
France
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| Título: |
Analysis of genome-wide differentiation between native and introduced populations of the cupped oysters Crassostrea gigas and Crassostrea angulata
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| Autores: |
Gagnaire, Pierre-alexandre
Lamy, Jean-baptiste
Cornette, Florence
Heurtebise, Serge
Degremont, Lionel
Flahauw, Emilie
Boudry, Pierre
Bierne, Nicolas
Lapegue, Sylvie
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| Data: |
2018-09
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| Ano: |
2018
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| Palavras-chave: |
Cupped oysters
Genome assembly
Species divergence
Reproductive barriers
Recombination rate
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| Resumo: |
The Pacific cupped oyster is genetically subdivided into two sister taxa, Crassostrea gigas and C. angulata, which are in contact in the north-western Pacific. The nature and origin of their genetic and taxonomic differentiation remains controversial due the lack of known reproductive barriers and the high degree of morphologic similarity. In particular, whether the presence of ecological and/or intrinsic isolating mechanisms contributes to species divergence is unknown. The recent co-introduction of both taxa into Europe offers a unique opportunity to test how genetic differentiation is maintained under new environmental and demographic conditions. We generated a pseudo-chromosome assembly of the Pacific oyster genome using a combination of BAC-end sequencing and scaffold anchoring to a new high-density linkage map. We characterized genome-wide differentiation between C. angulata and C. gigas in both their native and introduced ranges, and showed that gene flow between species has been facilitated by their recent co-introductions in Europe. Nevertheless, patterns of genomic divergence between species remain highly similar in Asia and Europe, suggesting that the environmental transition caused by the co-introduction of the two species did not affect the genomic architecture of their partial reproductive isolation. Increased genetic differentiation was preferentially found in regions of low recombination. Using historical demographic inference, we show that the heterogeneity of differentiation across the genome is well explained by a scenario whereby recent gene flow has eroded past differentiation at different rates across the genome after a period of geographical isolation. Our results thus support the view that low-recombining regions help in maintaining intrinsic genetic differences between the two species.
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| Tipo: |
Text
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| Idioma: |
Inglês
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| Identificador: |
https://archimer.ifremer.fr/doc/00455/56622/58337.pdf
https://archimer.ifremer.fr/doc/00455/56622/58350.pdf
http://archimer.ifremer.fr/doc/00455/56622/58351.xlsx
http://archimer.ifremer.fr/doc/00455/56622/58352.xlsx
http://archimer.ifremer.fr/doc/00455/56622/58353.xlsx
DOI:10.1093/gbe/evy194
https://archimer.ifremer.fr/doc/00455/56622/
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| Editor: |
Oxford Univ Press
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| Formato: |
application/pdf
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| Fonte: |
Genome Biology And Evolution (1759-6653) (Oxford Univ Press), 2018-09 , Vol. 10 , N. 9 , P. 2518-2534
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| Direitos: |
The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please cont
info:eu-repo/semantics/openAccess
restricted use
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